Towards Generating Large Synthetic Phytoplankton Datasets for Efficient Monitoring of Harmful Algal Blooms

Climate change is increasing the frequency and severity of harmful algal blooms (HABs), which cause significant fish deaths in aquaculture farms. This contributes to ocean pollution and greenhouse gas (GHG) emissions since dead fish are either dumped into the ocean or taken to landfills, which in turn negatively impacts the climate. Currently, the standard method to enumerate harmful algae and other phytoplankton is to manually observe and count them under a microscope. This is a time-consuming, tedious and error-prone process, resulting in compromised management decisions by farmers. Hence, automating this process for quick and accurate HAB monitoring is extremely helpful. However, this requires large and diverse datasets of phytoplankton images, and such datasets are hard to produce quickly. In this work, we explore the feasibility of generating novel high-resolution photorealistic synthetic phytoplankton images, containing multiple species in the same image, given a small dataset of real images. To this end, we employ Generative Adversarial Networks (GANs) to generate synthetic images. We evaluate three different GAN architectures: ProjectedGAN, FastGAN, and StyleGANv2 using standard image quality metrics. We empirically show the generation of high-fidelity synthetic phytoplankton images using a training dataset of only 961 real images. Thus, this work demonstrates the ability of GANs to create large synthetic datasets of phytoplankton from small training datasets, accomplishing a key step towards sustainable systematic monitoring of harmful algal blooms

Are Diffusion Models Vision-And-Language Reasoners?

Text-conditioned image generation models have recently shown immense qualitative success using denoising diffusion processes. However, unlike discriminative vision-and-language models, it is a non-trivial task to subject these diffusion-based generative models to automatic fine-grained quantitative evaluation of high-level phenomena such as compositionality. Towards this goal, we perform two innovations. First, we transform diffusion-based models (in our case, Stable Diffusion) for any image-text matching (ITM) task using a novel method called DiffusionITM. Second, we introduce the Generative-Discriminative Evaluation Benchmark (GDBench) benchmark with 7 complex vision-and-language tasks, bias evaluation and detailed analysis. We find that Stable Diffusion + DiffusionITM is competitive on many tasks and outperforms CLIP on compositional tasks like like CLEVR and Winoground. We further boost its compositional performance with a transfer setup by fine-tuning on MS-COCO while retaining generative capabilities. We also measure the stereotypical bias in diffusion models, and find that Stable Diffusion 2.1 is, for the most part, less biased than Stable Diffusion 1.5. Overall, our results point in an exciting direction bringing discriminative and generative model evaluation closer. We will release code and benchmark setup soon.Comment: Accepted to NeurIPS 202

Score-based Diffusion Models in Function Space

Diffusion models have recently emerged as a powerful framework for generative modeling. They consist of a forward process that perturbs input data with Gaussian white noise and a reverse process that learns a score function to generate samples by denoising. Despite their tremendous success, they are mostly formulated on finite-dimensional spaces, e.g. Euclidean, limiting their applications to many domains where the data has a functional form such as in scientific computing and 3D geometric data analysis. In this work, we introduce a mathematically rigorous framework called Denoising Diffusion Operators (DDOs) for training diffusion models in function space. In DDOs, the forward process perturbs input functions gradually using a Gaussian process. The generative process is formulated by integrating a function-valued Langevin dynamic. Our approach requires an appropriate notion of the score for the perturbed data distribution, which we obtain by generalizing denoising score matching to function spaces that can be infinite-dimensional. We show that the corresponding discretized algorithm generates accurate samples at a fixed cost that is independent of the data resolution. We theoretically and numerically verify the applicability of our approach on a set of problems, including generating solutions to the Navier-Stokes equation viewed as the push-forward distribution of forcings from a Gaussian Random Field (GRF).Comment: 26 pages, 7 figure